Basic Information
VIS ID
TVIS10000539
Fusion event
HBV-chr8 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43825289/43970146 (Hg38)
End
43825289/43970146 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/1073871; hsa-mir-10400/Downstream/17744642;
Nearest TSS
ENST00000518652/Upstream/773978; ENST00000518278/Downstream/2852091;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/692811, chr8-CpG: 41/Downstream/2647221
Nearby gene
POTEA(-606961) ;
Downstream sequence
AGAGTGTTTCCAACCTGCTCTATGAAACGGAAGGTTCAA
Junction sequence
CAAGTGTTTGCTGACGCAACCCCCACTGGATGGGGCTTGGCTATGGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGAGTGTTTCCAACCTGCTCTATGAAACGGAAGGTTCAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate