CDC16 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000541
Fusion event
HBV-CDC16 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
115012692/114247217 (Hg38)
End
115012692/114247217 (Hg38)
Location type
Intronic
Target gene
CDC16
miRNAs that regulate target gene
hsa-mir-93-5p
Nearest miRNA
hsa-mir-1267/Upstream/2656; hsa-mir-4502/Downstream/26611;
Nearest TSS
ENST00000623511/Upstream/1474; ENST00000461716/Downstream/16995;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/11818, chr13-CpG: 135/Downstream/34062
Upstream sequence
CTTTTCTTTTCCTTCTCACCTCCCCTCCCCTCTCTCTCGAGGGTTCTCACTCTGTT
Junction sequence
CTTTTCTTTTCCTTCTCACCTCCCCTCCCCTCTCTCTCGAGGGTTCTCACTCTGTTTCCAGTTGGGAAACATAGAGGTTCCTTGAGCAGGAATCGTGCAGGTCTTGCATGGTCCCGTGCTGGTAGTTGTGCTGGTAGTTGATGTTCCTGGAAGTAGAGGACAAACGGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate