Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000542
Fusion event
HBV-DOCK4 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
End
111578583/111938528 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-21-5p ; hsa-mir-98-5p ; hsa-mir-1277-5p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-5011-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p
Nearest miRNA
hsa-mir-10525/Upstream/9466997; hsa-mir-10399/Downstream/2714817;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/209919, chr7-CpG: 106/Downstream/267277
Downstream sequence
CACCATCTTCAGAGCAGACTTATTAGGGTTT
Junction sequence
ACTCCCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTAGGGGAGGAGATTAGGTTAATGATCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATCTTCAGAGCAGACTTATTAGGGTTT
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.