Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000562
Fusion event
HBV-SLC27A5 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
Start
End
59022628/58511261 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7e/Upstream/117815; hsa-mir-6807/Downstream/39024;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/11617, chr19-CpG: 52/Downstream/2680
Downstream sequence
CCCTCACCTGGGTCCACCACCAGCACCCGGGCCCCAGAGCTCAGCACAGAGTGCGCCA
Junction sequence
AATGTCCTCCTGTAAATGAATGTGAGGAAAGGAGGGAGTTTGCCACTCAGGATTAAAGACAGGTACAGTAGAGACCCTCACCTGGGTCCACCACCAGCACCCGGGCCCCAGAGCTCAGCACAGAGTGCGCCA
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.