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Viral Integration Site DataBase
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TVIS10000567
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000567
Fusion event
HBV-TP53 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7578702/7675384 (Hg38)
End
7578702/7675384 (Hg38)
Location type
Intronic
Target gene
TP53
miRNAs that regulate target gene
hsa-mir-125b-5p
;
hsa-mir-125a-5p
;
hsa-mir-25-3p
;
hsa-mir-30d-5p
;
hsa-mir-1285-3p
;
hsa-mir-612
;
hsa-mir-15a-5p
;
hsa-mir-16-5p
;
hsa-mir-221-3p
;
hsa-mir-222-3p
;
hsa-mir-214-3p
;
hsa-mir-10b-5p
;
hsa-mir-34a-5p
;
hsa-mir-608
;
hsa-mir-605-5p
;
hsa-mir-504-5p
;
hsa-mir-485-5p
;
hsa-mir-27a-3p
;
hsa-mir-454-3p
;
hsa-mir-324-5p
;
hsa-mir-150-5p
;
hsa-mir-375
;
hsa-mir-200a-3p
;
hsa-mir-491-5p
;
hsa-mir-30a-5p
;
hsa-mir-30b-5p
;
hsa-mir-30c-5p
;
hsa-mir-30e-5p
;
hsa-mir-19b-3p
;
hsa-mir-92a-2-5p
;
hsa-mir-92a-1-5p
;
hsa-mir-20a-5p
;
hsa-mir-18a-5p
;
hsa-mir-106b-5p
;
hsa-mir-106a-5p
;
hsa-mir-17-5p
;
hsa-mir-6803-5p
;
hsa-mir-6751-5p
;
hsa-mir-7150
;
hsa-mir-6778-5p
;
hsa-mir-1233-5p
;
hsa-mir-6766-5p
;
hsa-mir-6756-5p
;
hsa-mir-7110-5p
;
hsa-mir-4651
;
hsa-mir-6842-5p
;
hsa-mir-6752-5p
;
hsa-mir-6835-5p
;
hsa-mir-6825-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-6731-5p
;
hsa-mir-8085
;
hsa-mir-4736
;
hsa-mir-4763-3p
;
hsa-mir-1207-5p
;
hsa-mir-6797-5p
;
hsa-mir-1249-5p
;
hsa-mir-4644
;
hsa-mir-4306
;
hsa-mir-185-5p
;
hsa-mir-6722-3p
;
hsa-mir-1909-3p
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-1273f
;
hsa-mir-6760-5p
;
hsa-mir-5197-5p
;
hsa-mir-2110
;
hsa-mir-4531
;
hsa-mir-937-5p
;
hsa-mir-223-3p
;
hsa-mir-4697-3p
;
hsa-mir-6780b-5p
;
hsa-mir-4725-3p
;
hsa-mir-4271
;
hsa-mir-5703
;
hsa-mir-4516
;
hsa-mir-4434
;
hsa-mir-5702
;
hsa-mir-4795-5p
;
hsa-mir-4682
;
hsa-mir-194-3p
;
hsa-mir-5693
;
hsa-mir-622
;
hsa-mir-4650-5p
;
hsa-mir-1972
;
hsa-mir-1296-3p
;
hsa-mir-513b-3p
;
hsa-mir-6749-3p
;
hsa-mir-660-3p
;
hsa-mir-5193
;
hsa-mir-4286
;
hsa-mir-5196-3p
;
hsa-mir-5003-5p
;
hsa-mir-3065-5p
;
hsa-mir-3529-3p
;
hsa-mir-3165
;
hsa-mir-6880-5p
;
hsa-mir-8071
;
hsa-mir-6882-5p
;
hsa-mir-1264
;
hsa-mir-19a-3p
;
hsa-mir-377-3p
;
hsa-mir-300
;
hsa-mir-663a
;
hsa-mir-1228-3p
;
hsa-mir-151a-5p
;
hsa-mir-26a-1-3p
;
hsa-mir-28-5p
;
hsa-mir-125b-1-3p
;
hsa-mir-518c-3p
;
hsa-mir-638
;
hsa-mir-28-3p
;
hsa-mir-24-3p
;
hsa-mir-155-3p
;
hsa-mir-150-3p
;
hsa-mir-214-5p
;
hsa-mir-1225-3p
;
hsa-mir-1247-3p
;
hsa-mir-330-3p
;
hsa-mir-4276
;
hsa-mir-505-5p
;
hsa-mir-5587-3p
Nearest miRNA
hsa-mir-1253/Upstream/452005; hsa-mir-10226/Downstream/412672;
Nearest TSS
ENST00000595228/Upstream/265;
ENST00000463804/Downstream/109;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/23364
,
chr17-CpG: 23/Downstream/10588
Nearest cancer related gene
TP53
(TSG, No orient, 0)
Downstream sequence
TGAGGTGTCGACGCCAACTCTCTCTAGCTCGCTAGTGGGTT
Junction sequence
GGAACGGCAGACGAAGAAGGGGACGGTAGAGTCCCAAACGGCCCCGAGACGGGTCGTCCGCGGGATTCAGCGCCGACGGGACGTAGACAAAGGACGTCCCGCGCAGGATCCAGTTGAGGTGTCGACGCCAACTCTCTCTAGCTCGCTAGTGGGTT
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
085659T
Sample type
Tumor
Gender
Female
CpG Island Information
×
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