hsa-mir-5003-5p _LIHC.png
hsa-mir-4434 _LIHC.png
TP53 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000567
Fusion event
HBV-TP53 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
End
7578702/7675384 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-25-3p ; hsa-mir-30d-5p ; hsa-mir-1285-3p ; hsa-mir-612 ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-214-3p ; hsa-mir-10b-5p ; hsa-mir-34a-5p ; hsa-mir-608 ; hsa-mir-605-5p ; hsa-mir-504-5p ; hsa-mir-485-5p ; hsa-mir-27a-3p ; hsa-mir-454-3p ; hsa-mir-324-5p ; hsa-mir-150-5p ; hsa-mir-375 ; hsa-mir-200a-3p ; hsa-mir-491-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30e-5p ; hsa-mir-19b-3p ; hsa-mir-92a-2-5p ; hsa-mir-92a-1-5p ; hsa-mir-20a-5p ; hsa-mir-18a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7150 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-7110-5p ; hsa-mir-4651 ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-1273f ; hsa-mir-6760-5p ; hsa-mir-5197-5p ; hsa-mir-2110 ; hsa-mir-4531 ; hsa-mir-937-5p ; hsa-mir-223-3p ; hsa-mir-4697-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-5702 ; hsa-mir-4795-5p ; hsa-mir-4682 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-622 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-1296-3p ; hsa-mir-513b-3p ; hsa-mir-6749-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-4286 ; hsa-mir-5196-3p ; hsa-mir-5003-5p ; hsa-mir-3065-5p ; hsa-mir-3529-3p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-6882-5p ; hsa-mir-1264 ; hsa-mir-19a-3p ; hsa-mir-377-3p ; hsa-mir-300 ; hsa-mir-663a ; hsa-mir-1228-3p ; hsa-mir-151a-5p ; hsa-mir-26a-1-3p ; hsa-mir-28-5p ; hsa-mir-125b-1-3p ; hsa-mir-518c-3p ; hsa-mir-638 ; hsa-mir-28-3p ; hsa-mir-24-3p ; hsa-mir-155-3p ; hsa-mir-150-3p ; hsa-mir-214-5p ; hsa-mir-1225-3p ; hsa-mir-1247-3p ; hsa-mir-330-3p ; hsa-mir-4276 ; hsa-mir-505-5p ; hsa-mir-5587-3p
Nearest miRNA
hsa-mir-1253/Upstream/452005; hsa-mir-10226/Downstream/412672;
Nearest cancer related gene
TP53(TSG, No orient, 0)
Downstream sequence
TGAGGTGTCGACGCCAACTCTCTCTAGCTCGCTAGTGGGTT
Junction sequence
GGAACGGCAGACGAAGAAGGGGACGGTAGAGTCCCAAACGGCCCCGAGACGGGTCGTCCGCGGGATTCAGCGCCGACGGGACGTAGACAAAGGACGTCCCGCGCAGGATCCAGTTGAGGTGTCGACGCCAACTCTCTCTAGCTCGCTAGTGGGTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate