Basic Information
VIS ID
TVIS10000571
Fusion event
HBV-chr5 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
180786916/181359915 (Hg38)
End
180786916/181359915 (Hg38)
Location type
Intronic
Target gene
OR4F16 ; OR4F29 ; OR4F3
Nearest miRNA
hsa-mir-10397/Upstream/137282;
Nearest TSS
ENST00000502646/Upstream/30674; ENST00000456475/Downstream/7353;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/32072, chr5-CpG: 84/Downstream/76789
Downstream sequence
CTCACCGATTTACTAAGTATAGATTTTATTTCTATCCCTCACCTACCTGTTTTGCCAAGGGAACTAAGAAAAGAGCATCATCAAAAATTCAGATAGGTATAGTTCTCACAAGATGAACCAGA
Junction sequence
TTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCGCTCACCGATTTACTAAGTATAGATTTTATTTCTATCCCTCACCTACCTGTTTTGCCAAGGGAACTAAGAAAAGAGCATCATCAAAAATTCAGATAGGTATAGTTCTCACAAGATGAACCAGA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate