Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000606
Fusion event
HBV-STARD13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q13.2
Reference genome
Start
End
34239715/33665578 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-125b-5p ; hsa-mir-122-5p ; hsa-mir-4452 ; hsa-mir-3658 ; hsa-mir-1231 ; hsa-mir-183-3p ; hsa-mir-516b-5p ; hsa-mir-4276 ; hsa-mir-4653-3p ; hsa-mir-219a-1-3p ; hsa-mir-570-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-148a-3p ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4295 ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-2276/Upstream/9503074; hsa-mir-1267/Downstream/5998456;
Nearest CpG islands
Nearest cancer related gene
STARD13(TSG, No orient, 0)
Upstream sequence
ACCATTTAAGTTATCTCTCGATGAGCAGTTAAATGACAGCAATATTTTCTTTCACCAGCTCCCTTCTCCTGCCAGTTGCTTTGTGCTGGTTAATTTTGAT
Downstream sequence
GGAAAGACAATGCCTAATAGGATTATTTCAGACAATGGAGGAATTACTATCAAGGATAATTTTTTCTCTTATAGGAGAACGTGCATCTTTATTTTGACTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.