Basic Information
VIS ID
TVIS10000628
Fusion event
HBV-FAM157C integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
90188753/90122345 (Hg38)
End
90188753/90122345 (Hg38)
Location type
Intronic
Target gene
FAM157C
Nearest miRNA
hsa-mir-11401/Upstream/1406008;
Nearest TSS
ENST00000527434/Upstream/15884; ENST00000566898/Downstream/3677;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/15828, chr16-CpG: 34/Downstream/48987
Nearby gene
PRDM7(-46415) ;
Upstream sequence
ggtcagggtaagggtaagggttatggttagggttttagggttagggttttagggttagggttaggggttaggggttagggttagggttagggttagggtt
Downstream sequence
aggattagggttaggggttagggttagggttaggattaggggttagggttagggttagggtACTGTAAATAATTTCACATTATTACTAATAATAAATTAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate