Basic Information
VIS ID
TVIS10000631
Fusion event
HBV-LINC02055 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
137628302/136616059 (Hg38)
End
137628302/136616059 (Hg38)
Location type
Intronic
Target gene
LINC02055
Nearest miRNA
hsa-mir-1204/Upstream/1811114; hsa-mir-10400/Downstream/4116505;
Nearest TSS
ENST00000518652/Upstream/79083; ENST00000521090/Downstream/164794;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1157960, chr8-CpG: 119/Downstream/1880493
Nearby gene
KHDRBS3(-968454) ; FAM135B(+1513964) ;
Upstream sequence
gtaaaagaccgcatttgacgtggttcaattcacaggaccctcagttctttagggatgaactaaaaggttggtatcatcatgggcaaaagtgtcttaaact
Downstream sequence
agagtctcactccgtcactcaggctggagtgcagtggtatgatcctacctcactgcagcctcaaactcctggactcaaacaatcctcccacttcagcctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate