ARSG _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000641
Fusion event
HBV-ARSG integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
66256018/68259877 (Hg38)
End
66256018/68259877 (Hg38)
Location type
Intronic
Target gene
ARSG
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-mir-10226/Upstream/788292; hsa-mir-1250/Downstream/164574;
Nearest TSS
ENST00000595228/Upstream/476; ENST00000581639/Downstream/18455;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/462, chr17-CpG: 205/Downstream/30523
Upstream sequence
ctcaacagccccatgtggcttgtgtctattgtattggacagtgcagCTCTAGACCAGTACCCAACTCTAGTGTACCTGGAAAAATGTACCCGTGGTATTG
Downstream sequence
AGTTACTAGGAGAGGAAGGCTTATTTCAGGAAAAGGTCATGTAAATCTTCTGTCAGTACAGCCGGTGTTGACATTCAAGCTGAAAGGGTGTATGTAGACA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate