C12orf42 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000646
Fusion event
HBV-C12orf42 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
103909790/103516012 (Hg38)
End
103909790/103516012 (Hg38)
Location type
Intronic
Target gene
C12orf42
Nearest miRNA
hsa-let-7i/Upstream/3326063; hsa-mir-1178/Downstream/414413;
Nearest TSS
ENST00000382841/Upstream/20002; ENST00000551174/Downstream/31782;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/19947, chr12-CpG: 87/Downstream/324483
Nearby gene
C12orf42(-20002) ; PRPF31(+31782) ;
Upstream sequence
AATAATATATTTGTACTCTAGCTAATGTCATGTGTAAGAAAGATGAATGAGAGTAGATGCACGTGCTGGATTGAGTTTTTTGCTTGGTTATAGAGATATG
Downstream sequence
ATGCAGTATAGATAGTACTTGGAAGTTTGGTTTAACAAAAATTGGATATACTTCTTTAAAATTACTGCAACAAAATCATGATGGGGATCTGTAAACATGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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