Basic Information
VIS ID
TVIS10000652
Fusion event
HBV-FLJ46284 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
93777978/92765750 (Hg38)
End
93777978/92765750 (Hg38)
Location type
ncRNA_intronic
Target gene
FLJ46284
Nearest miRNA
hsa-mir-12123/Upstream/1560191; hsa-mir-10400/Downstream/264001;
Nearest TSS
ENST00000518652/Upstream/48; ENST00000521203/Downstream/117234;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/621338, chr8-CpG: 56/Downstream/199815
Upstream sequence
gttggtatcatcatgggcaaaagtgtcttaaacttgatagagcttattttgagaaataaagtttacagtttttatttttatattttaattccatttttcc
Downstream sequence
tggagccgtgagtcctggctatgggagaaacagtgccatatatgggatgctgattcagagcatacacagtcttctggagaactttaccccaggtctgcaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate