Basic Information
VIS ID
TVIS10000662
Fusion event
HBV-SRGAP2-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
121113600/121371739 (Hg38)
End
121113600/121371739 (Hg38)
Location type
ncRNA_intronic
Target gene
SRGAP2-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/4277011; hsa-mir-1182/Downstream/24478848;
Nearest TSS
ENST00000473358/Upstream/184637; ENST00000445260/Downstream/25015;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/184378, chr1-CpG: 137/Downstream/24185
Upstream sequence
CGTTTTACTCTCTTTTAACAAGAAAGTTCTTTAAGTTTTTTAGGGGAAAGTAACATTGTAAATTGTTGATTTTTGTTACTTCATTTGTTGACTTGGTAGC
Downstream sequence
GCTATTCTTTGACCTCTTTTTTATCTCATGTTTATTCATAACGTTTTCTCTTTATCATGCACCTTCATGAAATAGGAAATCACTTTAAAAAAGAAAAAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate