Basic Information
VIS ID
TVIS10000669
Fusion event
HBV-chr4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
191044274/190123119 (Hg38)
End
191044274/190123119 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5184679;
Nearest TSS
ENST00000502981/Upstream/58617; ENST00000616166/Downstream/50655;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/30665, chr4-CpG: 24/Downstream/50014
Nearby gene
DUX4(-30832) ;
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNaccctaaccctaaccctaaccctaaccctaaccctaccctaaccctaacccttaacccttaaccctaaccctaacccta
Downstream sequence
ggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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