Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000674
Fusion event
HBV-DHRS7C integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
Start
End
9702645/9799328 (Hg38)
Location type
Promoter
Target gene
Nearest miRNA
hsa-mir-1253/Upstream/1612324; hsa-mir-10226/Downstream/2282571;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/27380, chr17-CpG: 21/Downstream/105422
Upstream sequence
taaaaatacaaaaattagccggatgtggtggcaggcacctgtaatcctagctactcaggaggctgaggcaggagaatcacttgaacctgggagatggagg
Downstream sequence
ttgcggtgagccgaggtcgcaccactgcactccagcctgggcaacagagtgagactccgtctcagaaaaacaaaaaaaaaaaaaataggaggattgtttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.