Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000690
Fusion event
HBV-PLEKHG4B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
Start
End
118469/118354 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-1265 ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-138-5p ; hsa-mir-6820-5p ; hsa-mir-4660 ; hsa-mir-7978 ; hsa-mir-1307-3p ; hsa-mir-1207-3p ; hsa-mir-6736-3p ; hsa-mir-6739-3p ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-1287-3p ; hsa-mir-642a-5p ; hsa-mir-4742-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-449b-3p ; hsa-mir-7106-3p
Nearest miRNA
hsa-mir-10397/Downstream/944542;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/25732, chr5-CpG: 133/Downstream/46241
Nearby gene
PLEKHG4B(+21904) ;
Upstream sequence
aaataaGAAAAGAATAAATCTATTCAGATTCAGCCTGTTACAAATAATTATTTGCCTCATTTCTGTATTTTCTCTGTGCATGAGGCCTTGTTGAAATTTT
Downstream sequence
ctgactctcttccattatggggcatacgtagagtgctgagcccagcaactttagaatccttcccaagtacacatggatcactttccaaagttaaccaAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.