Basic Information
VIS ID
TVIS10000717
Fusion event
HBV-LOC102723944 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
1496549/1496314 (Hg38)
End
1496549/1496314 (Hg38)
Location type
Intronic
Target gene
LOC102723944
Nearest miRNA
hsa-mir-6720/Upstream/105903; hsa-mir-10398/Downstream/1357717;
Nearest TSS
ENST00000381078/Upstream/106480; ENST00000628509/Downstream/32597;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/102379, chr6-CpG: 27/Downstream/18966
Nearby gene
FOXF2(-100717) ; FOXC1(+114132) ;
Upstream sequence
taaaggtcttggggccaaaatgatctcaacctattttcaaactttaaatgggttagaagcctggctcgctggcatagagctaggcgtggaatatgagtcc
Downstream sequence
ggctgagccctgcctgaaatcctgacccacaaagtcatgaactatatgtatatatatgactgttattttaaaccactaggttttggaataatttcttgtg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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