FARS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000718
Fusion event
HBV-FARS2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
5617257/5617024 (Hg38)
End
5617257/5617024 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA6B
Target gene
FARS2
Nearest miRNA
hsa-mir-3691/Upstream/468702; hsa-mir-10398/Downstream/552280;
Nearest TSS
ENST00000381078/Upstream/158949; ENST00000454882/Downstream/78248;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/355322, chr6-CpG: 29/Downstream/234353
Upstream sequence
gtcaatgccttgatcttggaattctagtctctagaattgtgagaaaattaattttggttgtttaggtcaccgaatccgtgatactttgtatggcagctct
Downstream sequence
AATGGGCATGCTAACTGGAAAGACTGCAGTGGGAGTAGGGTAGTGTTGGGGTCCTGTGGACCCAGGGACAGATCAGGCAGGCAGACACCCCATTAAAAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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