Basic Information
VIS ID
TVIS10000731
Fusion event
HBV-LOC105373693 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
155378561/154522049 (Hg38)
End
155378561/154522049 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373693
Nearest miRNA
hsa-mir-128-1/Upstream/3153638; hsa-mir-10b/Downstream/4664786;
Nearest TSS
ENST00000437798/Upstream/62192; ENST00000493505/Downstream/175768;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/648644, chr2-CpG: 141/Downstream/175444
Nearby gene
KCNJ3(+176532) ;
Upstream sequence
ttatttgatttttgtatatagtgagagatagttttattcttttgcatatggatatccagttttctcagcaacatttattgaagagactatcttttccctc
Downstream sequence
gtgtatgttcttggcacctttgtcaaaaatgagttcattgtaggtgtgtggatttgtttgttgattatctattctgttccattgttctatgtgtctcttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate