VISDB Viral Integration Site DataBase

VIS ID

TVIS10000742

Fusion event

HBV-RALY integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr20

Cytoband

q11.22

Reference genome

Start

End

32582608/33994802 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-320a ; hsa-mir-486-3p ; hsa-mir-885-3p ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-4786-3p ; hsa-mir-4635 ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-7110-3p ; hsa-mir-3667-3p ; hsa-mir-6769b-3p ; hsa-mir-3183 ; hsa-mir-4723-3p ; hsa-mir-3614-3p ; hsa-mir-654-3p ; hsa-mir-1273h-3p ; hsa-mir-1285-3p ; hsa-mir-1321 ; hsa-mir-1324 ; hsa-mir-148a-3p ; hsa-mir-148b-3p ; hsa-mir-149-3p ; hsa-mir-152-3p ; hsa-mir-15a-3p ; hsa-mir-2110 ; hsa-mir-3166 ; hsa-mir-3187-5p ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-4270 ; hsa-mir-4271 ; hsa-mir-4437 ; hsa-mir-4441 ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-4524b-3p ; hsa-mir-4533 ; hsa-mir-4717-5p ; hsa-mir-4721 ; hsa-mir-4725-3p ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4747-5p ; hsa-mir-4756-5p ; hsa-mir-4764-3p ; hsa-mir-4771 ; hsa-mir-5088-5p ; hsa-mir-5189-5p ; hsa-mir-5196-5p ; hsa-mir-5704 ; hsa-mir-612 ; hsa-mir-6721-5p ; hsa-mir-6754-5p ; hsa-mir-6780b-5p ; hsa-mir-6785-5p ; hsa-mir-6847-3p ; hsa-mir-6860 ; hsa-mir-6883-5p ; hsa-mir-7845-5p ; hsa-mir-802 ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/1756955; hsa-mir-1-1/Downstream/54317;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/18, chr20-CpG: 96/Downstream/116649

Upstream sequence

tcagcctccttggcggccgagtcttagtttgcctctcggtgacatggggggaaagaaggaaactcgctttgcggggtgttcgtggattcagggagggaac

Downstream sequence

taatatgtgaaagaagtgtttaacacCGACAGGGaacatttaatgagacttcacccaggaacttcccaagccttatttcatttaatgttcacaacggcct