Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000744
Fusion event
HBV-TSGA10IP integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
Start
End
65719622/65952151 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10392/Upstream/302898; hsa-let-7a-2/Downstream/982283;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/32068, chr11-CpG: 73/Downstream/9152
Upstream sequence
ccatgttggccagactagtctcgaactccagacctcaaatgatctgcccgccttggcctcccaaagtgctgggatttcaggcaacagccgtcgcgcctgg
Downstream sequence
cctttgcccattttttgagttatttgctttcttgttactgagttacttgagttcacatattttggatattaaccccttttcagatgtatggtttgcaaat
Target sequence
acaccccccctacccaagaacccgcgacagtccctagaccctgctgatcagaatagttgcactcacctacgcagcagcagaaacactagttttc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.