Basic Information
VIS ID
TVIS10000757
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
8046646/7906515 (Hg38)
End
8046646/7906515 (Hg38)
Location type
Promoter
Nearest miRNA
hsa-mir-7158/Upstream/1256076; hsa-mir-10b/Downstream/2286099;
Nearest TSS
ENST00000437798/Upstream/6860; ENST00000442864/Downstream/72795;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/138906, chr2-CpG: 23/Downstream/121377
Nearby gene
LOC101929551(-6860) ;
Upstream sequence
ATACAAATGGACCTTTTTACCTGAAAACTCCTTTGTTGCTTAGAATGAAATTCAGAGGATTTTGCTGttttttttttttttttttttttttttttttttG
Downstream sequence
ACAGGAGGAAAAACGCACTATACTTGCACAGAACTGAACGAGCTTGCTAAAGATCCGGGCTGTGGATGGAGAAGAAAGGGACTCACCAGAGAtcattaag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate