Basic Information
VIS ID
TVIS10000761
Fusion event
HBV-LINC02211 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
25284750/25284641 (Hg38)
End
25284750/25284641 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5E
Target gene
LINC02211
Nearest miRNA
hsa-mir-10397/Upstream/8128649; hsa-mir-103a-1/Downstream/6651461;
Nearest TSS
ENST00000502646/Upstream/93685; ENST00000641091/Downstream/13093;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/93637, chr5-CpG: 29/Downstream/624592
Nearby gene
PRPF31(-444058) ; CDH9(+1595959) ;
Upstream sequence
ccctaaccctaaccctaaccctaaccctaatcctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccct
Downstream sequence
aattctcctgctcatatctttgtacctttgttttctttgcgaccttggcccccaatatttttttttaccttggtagTCACAAATACCAAAATTGCGTTTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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