Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000771
Fusion event
HBV-KIAA0895 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p14.2
Reference genome
Start
End
36421098/36381489 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-29c-3p ; hsa-mir-484 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-526b-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-1296-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-4307 ; hsa-mir-1246 ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-3646 ; hsa-mir-5680 ; hsa-mir-340-5p
Nearest miRNA
hsa-mir-1183/Upstream/1440655; hsa-mir-10399/Downstream/537868;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14081, chr7-CpG: 59/Downstream/8152
Upstream sequence
cccctaaccctaaccctaccctaacccaaccctaacccaaccctaactctagccctagccctagccctagccctaagccctaagccctaagcctaacccc
Downstream sequence
gtgaaaccctgtctttactaaaatacaaaaaattagtcaggtatggtggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgctt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.