VISDB Viral Integration Site DataBase

VIS ID

TVIS10000788

Fusion event

HBV-chr7 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr7

Cytoband

p22.3

Reference genome

Start

End

2662198/2622564 (Hg38)

Location type

Promoter;downstream

Fragile sites / regions

Target gene

IQCE ; TTYH3

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-1296-5p ; hsa-mir-484 ; hsa-mir-221-3p ; hsa-mir-218-5p ; hsa-mir-3678-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-513b-5p ; hsa-mir-2467-3p ; hsa-mir-7110-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-1233-3p ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-2355-5p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-150-5p ; hsa-mir-6748-3p ; hsa-mir-339-5p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-4685-5p ; hsa-mir-6837-5p ; hsa-mir-3620-3p ; hsa-mir-6895-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-656-3p ; hsa-mir-5011-5p ; hsa-mir-6888-5p ; hsa-mir-4428 ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-410-3p ; hsa-mir-143-3p ; hsa-mir-149-3p ; hsa-mir-1914-3p ; hsa-mir-3127-5p ; hsa-mir-3153 ; hsa-mir-3665 ; hsa-mir-3918 ; hsa-mir-4436b-3p ; hsa-mir-4468 ; hsa-mir-451b ; hsa-mir-4632-5p ; hsa-mir-4681 ; hsa-mir-4728-5p ; hsa-mir-4756-3p ; hsa-mir-4770 ; hsa-mir-5194 ; hsa-mir-564 ; hsa-mir-6088 ; hsa-mir-6733-5p ; hsa-mir-6735-5p ; hsa-mir-6738-5p ; hsa-mir-6739-5p ; hsa-mir-6781-5p ; hsa-mir-6785-5p ; hsa-mir-6815-5p ; hsa-mir-6865-5p ; hsa-mir-6879-5p ; hsa-mir-6883-5p ; hsa-mir-7843-5p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-339/Upstream/95419; hsa-mir-10399/Downstream/2166001;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/16433, chr7-CpG: 59/Downstream/8958

Upstream sequence

ctcactgtggctttaatttgcatttccctaatgactaataacggtgaggttttttttttttttttttttttttttttttttttttttttttttttttcct

Downstream sequence

cagctgctcctgtcccagctccTCCGGCCTCAGctcctcctgccccagctcctcctgccccagctcctcctcctcctcctctcaactcctactgctcctc