ARMC4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000795
Fusion event
HBV-ARMC4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
28186462/27897533 (Hg38)
End
28186462/27897533 (Hg38)
Location type
Intronic
Target gene
ARMC4
Nearest miRNA
hsa-mir-1265/Upstream/3621752; hsa-mir-107/Downstream/391725;
Nearest TSS
ENST00000439456/Upstream/61370; ENST00000425137/Downstream/84371;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/151251, chr10-CpG: 67/Downstream/100856
Upstream sequence
tcaacattaaagaaaaaaaatccaaaattcaaacatccaatcactcaccaattcctgattctacttttcaattctttcttatattgtctcttctctccat
Downstream sequence
ccacactgccatggtgttaggtcaaattttaatcattttcatctgaactactgtaatagcccaatttgtcacccattcttacaTGGTTTATTTTCTAATT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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