Basic Information
VIS ID
TVIS10000798
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
39572486/39532887 (Hg38)
End
39572486/39532887 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/2613455; hsa-mir-10399/Downstream/3618008;
Nearest TSS
ENST00000635602/Upstream/67795; ENST00000469737/Downstream/33352;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/118195, chr7-CpG: 55/Downstream/33290
Nearby gene
POU6F2(-68096) ; YAE1(+33489) ;
Nearest cancer related gene
POU6F2(TSG, -68096) ;
Upstream sequence
CTAAAGGTGGTAAATCAAGAATTCTTATGCTACAGAGAAAACAGATTCTGCTATTACCTAAGAAATCAACTGGAAGGCtttttttttttttttttttttt
Downstream sequence
TTATAGAATGTGAGTCCTTGTTATGGGGTTTGGGAGACCGCAGATTTAGAAGGAATTGTGGGGGAAGCAACTGCCGTTTGCACAAGCGCTTGACcagggc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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