Basic Information
VIS ID
TVIS10000801
Fusion event
HBV-LINC02383 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
43479355/43477338 (Hg38)
End
43479355/43477338 (Hg38)
Location type
Intronic
Target gene
LINC02383
Nearest miRNA
hsa-mir-12113/Upstream/2975219; hsa-mir-1243/Downstream/4175331;
Nearest TSS
ENST00000502981/Upstream/343471; ENST00000507639/Downstream/15205;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/819805, chr4-CpG: 174/Downstream/970031
Nearby gene
GRXCR1(-446680) ; KCTD8(+696565) ;
Upstream sequence
gaatagcatgcactcaactttggtggaatggtatggaatggaatggaatggaatggaattgaatggaatggaatggaaatgaatcaaaccgagtggaaag
Downstream sequence
tgtctttgtggggtggggaaaactagagcattctatcctgccatcttcctctgcctttctcCtgcatgttgatttttgtatcctgtattttctaaaaatt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate