Basic Information
VIS ID
TVIS10000810
Fusion event
HBV-STEAP2-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
89325062/89695748 (Hg38)
End
89325062/89695748 (Hg38)
Location type
ncRNA_intronic
Target gene
STEAP2-AS1
Nearest miRNA
hsa-mir-10525/Upstream/13780479; hsa-mir-10399/Downstream/2508267;
Nearest TSS
ENST00000635602/Upstream/251774; ENST00000475789/Downstream/427142;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/935779, chr7-CpG: 98/Downstream/422830
Upstream sequence
ttttctttcttttttttttttttttttttttttttttAAAAAAAAAAAGGGGtttttttttttttttttttttttttttttttttttttttttttttttt
Downstream sequence
gcactgtgctggcttaagatctgaccagcgcagccatagtggtagtggccacaggggtgcttatgtcacttcatccctaggtttaggtgactcagaacag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate