ZHX2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000819
Fusion event
HBV-ZHX2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
123942221/122929981 (Hg38)
End
123942221/122929981 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
ZHX2
miRNAs that regulate target gene
hsa-mir-139-5p
Nearest miRNA
hsa-mir-12123/Upstream/3604716; hsa-mir-10400/Downstream/285807;
Nearest TSS
ENST00000518652/Upstream/66596; ENST00000521258/Downstream/55648;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/147134, chr8-CpG: 78/Downstream/111836
Nearest cancer related gene
ZHX2(TSG, No orient, 0)
Upstream sequence
tggacattttgagctccttggggcctatgctgaaaaaggaaatatattccgacaaaaactagacagaggcattcgcagaatcacgtttgtgatgtgtgaa
Downstream sequence
GTACAACAGGAAGGTAACAGTCTTCCCGTTACCTGCTTCTAAAACCCAGAAGGTAACAGCACAGAGCGGGTGTAATGAAGGCTctgagacagatcactga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate