Basic Information
VIS ID
TVIS10000824
Fusion event
HBV-LOC107986051 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
168748108/169030320 (Hg38)
End
168748108/169030320 (Hg38)
Location type
Intronic
Target gene
LOC107986051
Nearest miRNA
hsa-let-7g/Upstream/478371; hsa-mir-1224/Downstream/1392783;
Nearest TSS
ENST00000440867/Upstream/27246; ENST00000480669/Downstream/92352;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/779978, chr3-CpG: 39/Downstream/115922
Nearby gene
PRPF31(-108327) ; MECOM(+53179) ;
Upstream sequence
ccaaattctttagtgtgacacagaaggctctTCtgcccacctgaatgttccagtagaagatgtattatttactcaccaccttttcttgtttccctgagag
Downstream sequence
cttacagttcagcatggctggggaagcctcaggaaacttacaatcatggcagaaggggaagcaaacatgtccctcttcatatggcagcaggaaggagaag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate