Basic Information
VIS ID
TVIS10000827
Fusion event
HBV-SLC8A1-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
40228639/40001499 (Hg38)
End
40228639/40001499 (Hg38)
Location type
ncRNA_intronic
Target gene
SLC8A1-AS1
Nearest miRNA
hsa-mir-1301/Upstream/4530013; hsa-mir-10b/Downstream/7376176;
Nearest TSS
ENST00000437798/Upstream/81806; ENST00000439606/Downstream/40851;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/222176, chr2-CpG: 16/Downstream/449838
Upstream sequence
cacccaggctggagtgcagtggcgtgatctcggctcactgcaagctccgcctcctgggttgacaccgttctgcctcagcctctcaagtagctgggactac
Downstream sequence
aggcgcccgccaccacgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctggatctcctgacctcgtgat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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