Basic Information
VIS ID
TVIS10000882
Fusion event
HBV-LOC107984608 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
105534853/104882502 (Hg38)
End
105534853/104882502 (Hg38)
Location type
Intronic
Target gene
LOC107984608
Nearest miRNA
hsa-mir-1297/Upstream/2836498; hsa-mir-1267/Downstream/2648669;
Nearest TSS
ENST00000623511/Upstream/1457302; ENST00000640578/Downstream/583365;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2036089, chr13-CpG: 29/Downstream/1610558
Nearby gene
MIR548AS(-1600005) ; DAOA-AS1(+576553) ;
Upstream sequence
CTAAGTACAATTAAGTTGAATTTTATCGTGTCCTTAATGTAGTTATATAATCACCCAACAACTTTACTTAGAAGTAAATAAATCATGCTTGTTTAAGATT
Downstream sequence
AAACCataaaaattatatttttattaaagatttttaaGTTTTTGTCAAGAAGTTCTTCTTTAAATTCTTGCTTGCTCCAAAAAAAATACTTAGAATGCTA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate