ARNT2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000906
Fusion event
HBV-ARNT2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
80755812/80463471 (Hg38)
End
80755812/80463471 (Hg38)
Location type
Intronic
Target gene
ARNT2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-10393/Upstream/1253600; hsa-mir-11181/Downstream/117632;
Nearest TSS
ENST00000557528/Upstream/18319; ENST00000531595/Downstream/6772;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/58420, chr15-CpG: 187/Downstream/231384
Upstream sequence
GCCTCTACAGTCTCAGTTCATATGAACCAGACAAGTGTTGCAGATAAGCTGGGTAGAATTTGGTACAGTGTTGCTTATGAGCAACTAAAGTTGCTTCAGT
Downstream sequence
gggttagggttagggttagggttagggttagCACACACTGGAATGAAAGATTTTGTAGGAGGGGTGGCTTTCTAACACCATGCTGATATGGATGGGTGAt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate