Basic Information
VIS ID
TVIS10000911
Fusion event
HBV-LINC02037 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
193972122/194254333 (Hg38)
End
193972122/194254333 (Hg38)
Location type
Intronic
Target gene
LINC02037
Nearest miRNA
hsa-let-7g/Upstream/4424324; hsa-mir-3137/Downstream/880173;
Nearest TSS
ENST00000440867/Upstream/4180; ENST00000440556/Downstream/22349;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/49988, chr3-CpG: 25/Downstream/15303
Nearby gene
HES1(-115721) ; LINC00887(+46867) ;
Upstream sequence
GACAAGCTGAGAAAACACCTTTCATACTAGCCTCCAACGGAAATTAAAGACGTGTAGCCGTGTCGCCTTCTGGATTCCATAAATCCCTGGCTATCGCTGT
Downstream sequence
gacttgccccagatctccagtttaatggtggcaaagctgagataagaaccctggtctctgagtccagctctgatgctgctccccattTGTGCTGTGAAGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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