Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000920
Fusion event
HBV-ARHGAP42 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
End
100676464/100805733 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-221-3p ; hsa-mir-28-5p ; hsa-mir-222-3p ; hsa-mir-138-5p ; hsa-mir-376c-3p ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-4299 ; hsa-mir-3692-5p ; hsa-mir-4633-3p ; hsa-mir-6071 ; hsa-mir-6500-5p ; hsa-mir-587 ; hsa-mir-6131 ; hsa-mir-3185 ; hsa-mir-133a-5p ; hsa-mir-93-3p ; hsa-mir-885-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428 ; hsa-mir-4511
Nearest miRNA
hsa-mir-10392/Upstream/4464207; hsa-let-7a-2/Downstream/714087;
Nearest CpG islands
Upstream sequence
ttacttcttgattatatgctaaacaaggggtggagtattcaggagttttctgggaaaggggtggacagttcctggaactgaaggtcccttccctttttag
Downstream sequence
accatgtagggtaacttcctgacattgccatagcatttataaactgtcatggtgctggtgggagtgccttttagcatgctaatgcattataattaatgta
Target sequence
CCTGTTTCCATGGCGCGATGGAGGATCACTGAAGTAGGCTCTACTGAATATTAGGTGTAAATGCTTTCAGGTAGCCCTTCTTGGTTGACTTAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.