Basic Information
VIS ID
TVIS10000924
Fusion event
HBV-LINC01239 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
22712493/22712494 (Hg38)
End
22712493/22712494 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA9C
Target gene
LINC01239
Nearest miRNA
hsa-mir-101-2/Upstream/1200309; hsa-let-7a-1/Downstream/6151132;
Nearest TSS
ENST00000422679/Upstream/30024; ENST00000448570/Downstream/54681;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/264798, chr9-CpG: 156/Downstream/1108199
Upstream sequence
ggctgagcagagtcagggcaggtccagagtcgaggcagagctagggcCCAAGCAGCGCCATGGTAGCACcagggcagaggagggcagggcaatgcaggac
Downstream sequence
cagtttggagggctcagaagaagacaggaaaatgtgggaaagtttgaaacttcctagagacttgttgaatagctttgacaaaaatgcttacaataatatg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate