Basic Information
VIS ID
TVIS10000938
Fusion event
HBV-LOC339862 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
18168250/18126758 (Hg38)
End
18168250/18126758 (Hg38)
Location type
Intronic
Target gene
LOC339862
Nearest miRNA
hsa-mir-12127/Upstream/1193498; hsa-let-7g/Downstream/1188090;
Nearest TSS
ENST00000440867/Upstream/113103; ENST00000475063/Downstream/224773;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/383795, chr3-CpG: 19/Downstream/299190
Upstream sequence
tattgtacagaaagttttcaatttccctcacccagctcaatcagaggaatcactatgtatggcagctgtaaccttaccaaatgtatttcttaaacaataa
Downstream sequence
CTGAACATCATCGAAGATTTTTGTGATGCAGGCAGCAGGGTTGTTGAAGTATTGCCAGTGAGTAGAAGTGGTTTTGTGGCCACTGGGCCCCTTGCCCACC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate