Basic Information
VIS ID
TVIS10000950
Fusion event
HBV-chr15 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q12
Reference genome
GRCh37/hg19
Start
26672036/26426889 (Hg38)
End
26672036/26426889 (Hg38)
Location type
Intronic
Target gene
LINC02248 ; LOC105370740
Nearest miRNA
hsa-mir-1268a/Upstream/578064; hsa-mir-10393/Downstream/1999602;
Nearest TSS
ENST00000557528/Upstream/31817; ENST00000450324/Downstream/6485;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/344140, chr15-CpG: 37/Downstream/202061
Nearby gene
LINC00929(-293852) ; GABRB3(+116658) ;
Upstream sequence
ggcacaaggcctcaggcataccaaatcactcttatcaggccgaatattcctagggctcagagctcatctccaaggatgtagccaagggccagttcttaaa
Downstream sequence
acagggtttttttttttttttttttttttggagaggggtggtgcggtgggaatgtgcaaggtttgaacaacctaggtctgttgaattaactcttgcctgc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate