VISDB Viral Integration Site DataBase

VIS ID

TVIS10000994

Fusion event

HBV-GSK3B integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr3

Cytoband

q13.33

Reference genome

Start

End

119561134/119842287 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26a-5p ; hsa-mir-29b-3p ; hsa-mir-155-5p ; hsa-mir-877-3p ; hsa-mir-425-5p ; hsa-mir-92a-3p ; hsa-mir-183-5p ; hsa-mir-96-5p ; hsa-mir-182-5p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-let-7f-2-3p ; hsa-mir-98-3p ; hsa-mir-190a-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-4789-5p ; hsa-mir-5011-5p ; hsa-mir-346 ; hsa-mir-199a-5p ; hsa-mir-409-5p ; hsa-mir-1277-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-513c-3p ; hsa-mir-369-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-6083 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-1297 ; hsa-mir-5697 ; hsa-mir-5683 ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-1910-5p ; hsa-mir-8064 ; hsa-mir-4643 ; hsa-mir-8485 ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-377-3p ; hsa-mir-6787-3p ; hsa-mir-548c-3p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-9-5p ; hsa-mir-769-5p ; hsa-mir-27a-3p ; hsa-mir-129-1-3p ; hsa-mir-99b-3p ; hsa-mir-29a-3p ; hsa-mir-26a-1-3p ; hsa-mir-501-5p ; hsa-mir-616-5p ; hsa-mir-1246 ; hsa-mir-942-5p ; hsa-mir-224-5p ; hsa-mir-29a-5p ; hsa-mir-744-5p ; hsa-mir-203a-3p

Nearest miRNA

hsa-let-7g/Upstream/2991920; hsa-mir-12124/Downstream/242277;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/31975, chr3-CpG: 171/Downstream/251641

Nearest cancer related gene

GSK3B(TSG, No orient, 0)

Upstream sequence

GCATCTAGAAGGTGAGTTGGGGCTAAAGATTGGATTGAAGATCAAAAGAGAAGAGGAAAAGGATCAAAGGGGACGAAAAGAAGAGAAGGAGAAGGAGGTC

Downstream sequence

CAGCACACCCTAGCTCTAACCCGTGAATAATTTTTTTTTGGTATATAAGAGTCTTGTCACATTCTGATCTAAATCTCAGTTAAACATATTTGCATTGCAG