Basic Information
VIS ID
TVIS10001004
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
172813994/172844854 (Hg38)
End
172813994/172844854 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/700210; hsa-mir-1182/Downstream/3123516;
Nearest TSS
ENST00000473358/Upstream/68949; ENST00000452366/Downstream/62046;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/311449, chr1-CpG: 100/Downstream/631985
Nearby gene
FASLG(-177982) ; TNFSF18(+196366) ;
Upstream sequence
aagagggagggaggaaggaaggaagggtaagagagaagagaggaaggaagagaagaagaaaggaagggaaggaaggaaggggggggagagagagggaggg
Downstream sequence
agggaGGCCTTGTATTTCCCAGAAATGCCCTAATAGTGCATATTATTCTTTAACTCATTTAGCATTTAACAACAGAAAATGTATTGTTCTTATTTTCAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate