CNTNAP4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001006
Fusion event
HBV-CNTNAP4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
76454968/76421071 (Hg38)
End
76454968/76421071 (Hg38)
Location type
Intronic
Target gene
CNTNAP4
Nearest miRNA
hsa-mir-1225/Upstream/6390649; hsa-mir-11401/Downstream/447865;
Nearest TSS
ENST00000527434/Upstream/104891; ENST00000619533/Downstream/132346;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/185776, chr16-CpG: 34/Downstream/213867
Upstream sequence
AATATAAATGTAAGCTTTATGACTTGTCCACATATCTCTCATAAAACAATTTATTGCTGTGTTTCAACAATAGTTACAGATTACAGCCAAGTTTGCATCT
Downstream sequence
TTCCTGTGCTTTTTCTCTTCTGGCTATTTGATCTGTCTTGGGAATTCAAACCCTTTTATGCAAAAGGTACTAAACAGTATATTTTATAACTTGTATCTCC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate