Basic Information
VIS ID
TVIS10001008
Fusion event
HBV-LINC02006 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
153276811/153559022 (Hg38)
End
153276811/153559022 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
LINC02006
Nearest miRNA
hsa-let-7g/Upstream/1993027; hsa-mir-1224/Downstream/5723624;
Nearest TSS
ENST00000440867/Upstream/74527; ENST00000463297/Downstream/322504;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/395725, chr3-CpG: 131/Downstream/561976
Nearby gene
C3orf79(-56325) ; ARHGEF26-AS1(+465379) ;
Upstream sequence
aaactcctgatctcaggtaatccacccgtctcggcctcccaaagtgctgggacgacaggtgtaagccaccgtgcccagcctgaccagtttcatatctaac
Downstream sequence
aaaaaaatggtaatgggaatatcaccactgacccccccagaaatacaaccatgaaagaatactataaacacctttttgcaaataaactagaaaatctaga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate