Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001011
Fusion event
HBV-SYN3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
Start
End
33169264/32773278 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1286/Upstream/1151747; hsa-let-7a-3/Downstream/663304;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/297901, chr22-CpG: 81/Downstream/28116
Upstream sequence
ggcagattgcctgagcttaggagttcaagaccagcctgggcaacacagtgaaaaccctgtctctactaaaatacaacaattagccggccatggtggcatg
Downstream sequence
agcctgtagtcccaactacttgggaggctgaggcaggagaattgcttgaaccctggaggcggaggttgcagtgagccgagattgtgccactgcactccag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.