ARPP21 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001012
Fusion event
HBV-ARPP21 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
35729869/35688377 (Hg38)
End
35729869/35688377 (Hg38)
Location type
Intronic
Target gene
ARPP21
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-12127/Upstream/3181988; hsa-let-7g/Downstream/56099;
Nearest TSS
ENST00000440867/Upstream/5947; ENST00000494494/Downstream/937;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/48305, chr3-CpG: 50/Downstream/691833
Upstream sequence
ATACAAGATTTTGTTAAATAACTTGGAATATAATTACAATTTGCCTTAATGAAGTTAATGTTAATTATATTTGAAAAATTAATCCCGGGAGGAGACTCTG
Downstream sequence
CTCTGAACCCATCTACTATCAAGTAATGTTTATTTAAGAAATACCCACTTCTACTTCAATAAATCACTGTGCAAAAAGTCATACATTTACAAACTCAAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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