Basic Information
VIS ID
TVIS10001016
Fusion event
HBV-FNDC11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62187633/63556280 (Hg38)
End
62187633/63556280 (Hg38)
Location type
Exonic
Target gene
FNDC11
Nearest miRNA
hsa-mir-1-1/Upstream/269414; hsa-mir-1914/Downstream/363169;
Nearest TSS
ENST00000382410/Upstream/2137; ENST00000411579/Downstream/5325;
Nearest CpG islands
chr20-CpG: 58/Target, None/Upstream, None/Downstream
Upstream sequence
TCCTGACCATGATGGTGCCGGGGCGGCTACACGTCAAGCACCGCCTGGTGTCTGATGTCAGTGCCACCAAGATCCCGCACATCTGGCTCATGCTGAGCAC
Downstream sequence
CAAGATGCCTGTCGTGTTTGACCGAAAGGCGTCGGCGGCTCACCAGGACTGGGCCCGGCTGCGCTGGTTCGTCACCATCCAGCCAGCCACATCGGAGCAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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