VISDB Viral Integration Site DataBase

VIS ID

TVIS10001019

Fusion event

HBV-LIMK1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr7

Cytoband

q11.23

Reference genome

Start

End

73533328/74118998 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-mir-346 ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-143-3p ; hsa-mir-1207-5p ; hsa-mir-1233-5p ; hsa-mir-1909-3p ; hsa-mir-2861 ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3127-5p ; hsa-mir-3714 ; hsa-mir-3918 ; hsa-mir-4271 ; hsa-mir-4434 ; hsa-mir-4512 ; hsa-mir-4516 ; hsa-mir-4651 ; hsa-mir-4725-3p ; hsa-mir-4763-3p ; hsa-mir-5703 ; hsa-mir-605-3p ; hsa-mir-608 ; hsa-mir-6722-3p ; hsa-mir-6731-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6770-5p ; hsa-mir-6778-5p ; hsa-mir-6780b-5p ; hsa-mir-6783-5p ; hsa-mir-6788-5p ; hsa-mir-6808-5p ; hsa-mir-6878-5p ; hsa-mir-6893-5p ; hsa-mir-8085 ; hsa-mir-940 ; hsa-mir-3180-5p ; hsa-mir-3973 ; hsa-mir-4251 ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-519d-3p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-539-5p ; hsa-mir-93-5p

Nearest miRNA

hsa-mir-1183/Upstream/407601; hsa-mir-10399/Downstream/72200;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/34631, chr7-CpG: 116/Downstream/54924

Upstream sequence

tttttctaacttttacctgctaagaatgaagctcctatcaatattgctatacagttgttttgtaaaaataggttttcatttatcttgggtaaattttttt

Downstream sequence

cattctcctgcctcagcctcccacgtagctgggactacaggcgcccgccaccacgcctggctaattttttgtatttttagtagagacggggtttcaccat