Basic Information
VIS ID
TVIS10001023
Fusion event
HBV-LOC105375392 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
91105819/91476504 (Hg38)
End
91105819/91476504 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7E
Target gene
LOC105375392
Nearest miRNA
hsa-mir-10525/Upstream/15561235; hsa-mir-10399/Downstream/727511;
Nearest TSS
ENST00000635602/Upstream/164064; ENST00000438114/Downstream/80344;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/209136, chr7-CpG: 35/Downstream/404179
Nearby gene
FZD1(-207687) ; MTERF(+396202) ;
Upstream sequence
tgtaacagcttggaaacactgttatttagaatgtgtgaagggatatttgggagctcattgaggcctatgggggaaaattaaatatcttcagagaagaatt
Downstream sequence
atgagaatgaaaacaTGATCCAAGGACTCTAATGGATTAAATATAACCACTAAAACGTATATGCAAGTATATGCATTGATATAGAAAAATGTTggcctgg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate