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TVIS10001024
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001024
Fusion event
HBV-TBC1D13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
131558292/128796013 (Hg38)
End
131558292/128796013 (Hg38)
Location type
Intronic
Target gene
TBC1D13
miRNAs that regulate target gene
hsa-mir-26b-5p
;
hsa-mir-19b-3p
;
hsa-let-7b-5p
;
hsa-mir-26a-5p
;
hsa-mir-142-3p
;
hsa-mir-559
;
hsa-mir-548b-5p
;
hsa-mir-548a-5p
;
hsa-mir-548c-5p
;
hsa-mir-548d-5p
;
hsa-mir-548j-5p
;
hsa-mir-1297
;
hsa-mir-548h-5p
;
hsa-mir-548i
;
hsa-mir-548w
;
hsa-mir-548y
;
hsa-mir-548o-5p
;
hsa-mir-548ab
;
hsa-mir-548ad-5p
;
hsa-mir-548ae-5p
;
hsa-mir-4465
;
hsa-mir-548ak
;
hsa-mir-548am-5p
;
hsa-mir-548ap-5p
;
hsa-mir-548aq-5p
;
hsa-mir-548ar-5p
;
hsa-mir-548as-5p
;
hsa-mir-548au-5p
;
hsa-mir-5697
;
hsa-mir-548ay-5p
;
hsa-mir-548bb-5p
;
hsa-mir-665
;
hsa-mir-4768-3p
;
hsa-mir-3973
;
hsa-mir-661
;
hsa-mir-1254
;
hsa-mir-3116
;
hsa-mir-4667-5p
;
hsa-mir-4700-5p
;
hsa-mir-6852-5p
;
hsa-mir-8089
;
hsa-mir-7154-5p
;
hsa-mir-4763-3p
;
hsa-mir-1207-5p
;
hsa-mir-5192
;
hsa-mir-4644
;
hsa-mir-4306
;
hsa-mir-185-5p
;
hsa-mir-4696
;
hsa-mir-15b-3p
;
hsa-mir-8060
;
hsa-mir-6760-5p
;
hsa-mir-451b
;
hsa-mir-6859-5p
;
hsa-mir-3916
;
hsa-mir-3125
;
hsa-mir-6856-5p
;
hsa-mir-6758-5p
;
hsa-mir-1910-3p
;
hsa-mir-4758-5p
;
hsa-mir-1238-5p
;
hsa-mir-505-5p
;
hsa-mir-5703
;
hsa-mir-4516
;
hsa-mir-4434
;
hsa-mir-4745-5p
;
hsa-mir-4481
;
hsa-mir-1253
;
hsa-mir-6840-3p
;
hsa-mir-218-1-3p
;
hsa-mir-1273g-5p
;
hsa-mir-203a-5p
;
hsa-mir-648
;
hsa-mir-8485
;
hsa-mir-629-3p
;
hsa-mir-6818-3p
;
hsa-mir-4713-5p
;
hsa-mir-6867-3p
;
hsa-mir-519e-5p
;
hsa-mir-515-5p
;
hsa-mir-202-5p
;
hsa-mir-337-3p
;
hsa-mir-3655
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-7113-3p
;
hsa-mir-4469
;
hsa-mir-5695
;
hsa-mir-519d-5p
;
hsa-mir-3667-3p
;
hsa-mir-5088-3p
;
hsa-mir-6810-5p
;
hsa-mir-6773-5p
;
hsa-mir-6724-5p
;
hsa-mir-4652-5p
;
hsa-mir-3191-3p
;
hsa-mir-3144-5p
;
hsa-mir-365b-5p
;
hsa-mir-365a-5p
;
hsa-mir-6774-5p
;
hsa-mir-635
;
hsa-mir-5001-3p
;
hsa-mir-4792
;
hsa-mir-6828-5p
;
hsa-mir-6781-3p
;
hsa-mir-2682-3p
;
hsa-mir-873-5p
;
hsa-mir-4468
;
hsa-mir-6891-3p
;
hsa-mir-6072
;
hsa-mir-125a-3p
;
hsa-mir-6165
;
hsa-mir-181d-5p
;
hsa-mir-181c-5p
;
hsa-mir-181a-5p
;
hsa-mir-181b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/403299; hsa-mir-12126/Downstream/1073592;
Nearest TSS
ENST00000422679/Upstream/8664;
ENST00000372642/Downstream/22461;
Nearest CpG islands
None/Target,
chr9-CpG: 64/Upstream/8746
,
chr9-CpG: 138/Downstream/22298
Upstream sequence
ttctctagttttgaccatcagttttccttctgtcttttccttcctcactactcagccttgattctatgtctgttattaaaatccttctcttggaaaaatt
Downstream sequence
GCATGTATACATATACAATGACTACAGCTTTTTAAAAAAATACTGTTTTTAAAATAAAATGTTGTAAttgttgttgttattattatttttttgagactga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
074797T
Sample type
Tumor
Gender
Female
CpG Island Information
×
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