hsa-mir-6773-5p _LIHC.png
hsa-mir-4700-5p _LIHC.png
hsa-mir-4434 _LIHC.png
TBC1D13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001026
Fusion event
HBV-TBC1D13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
End
131558455/128796176 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-let-7b-5p ; hsa-mir-26a-5p ; hsa-mir-142-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-1297 ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-4465 ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-5697 ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-3973 ; hsa-mir-661 ; hsa-mir-1254 ; hsa-mir-3116 ; hsa-mir-4667-5p ; hsa-mir-4700-5p ; hsa-mir-6852-5p ; hsa-mir-8089 ; hsa-mir-7154-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4696 ; hsa-mir-15b-3p ; hsa-mir-8060 ; hsa-mir-6760-5p ; hsa-mir-451b ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-1910-3p ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-505-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-1253 ; hsa-mir-6840-3p ; hsa-mir-218-1-3p ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-648 ; hsa-mir-8485 ; hsa-mir-629-3p ; hsa-mir-6818-3p ; hsa-mir-4713-5p ; hsa-mir-6867-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-3655 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-3667-3p ; hsa-mir-5088-3p ; hsa-mir-6810-5p ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-4652-5p ; hsa-mir-3191-3p ; hsa-mir-3144-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-5001-3p ; hsa-mir-4792 ; hsa-mir-6828-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-873-5p ; hsa-mir-4468 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-125a-3p ; hsa-mir-6165 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/403462; hsa-mir-12126/Downstream/1073429;
Upstream sequence
ctaaagggtgaaatgcaagctccagagccctcctggcttcactacagctgtctttAAGTAGTGAATTTAACGAAAGGAAAAAGAAGATGCACCCAGACTA
Downstream sequence
tcccaggctcaagcaattcctgtgtcagcctccccagtagttgggattacaggcacctcccactgcgcctggctaattttttttttttttgagacggagt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate